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| ICAO | IATA | Name | Location | Country |
|---|---|---|---|---|
| SELO | LOH | Camilo Ponce Enriquez Airport | Loja | Ecuador |
| SEAM | ATF | Chachoan Airport | Ambato | Ecuador |
| SELT | Cotopaxi International Airport | Latacunga | Ecuador | |
| SEMT | MEC | Eloy Alfaro International Airport | Manta | Ecuador |
| SECO | OCC | Francisco De Orellana Airport | Coca | Ecuador |
| SEMH | MCH | General M. Serrano Airport | Machala | Ecuador |
| SEES | ESM | General Rivadeneira Airport | Esmeraldas | Ecuador |
| SESA | SNC | General Ulpiano Paez Airport | Salinas | Ecuador |
| SEMA | MRR | J.m. Velasco Ibarra Airport | Macara | Ecuador |
| SEJI | JIP | Jipijapa Airport | Jipijapa | Ecuador |
| SEGY | GYE | José Joaquín De Olmedo International Airport | Guayaquil | Ecuador |
| SELA | LGQ | Lago Agrio Airport | Lago Agrio | Ecuador |
| SEBC | BHA | Los Perales Airport | Bahia de Caraquez | Ecuador |
| SEMC | XMS | Macas Airport | Macas | Ecuador |
| SECU | CUE | Mariscal Lamar Airport | Cuenca | Ecuador |
| SEQU | UIO | Mariscal Sucre International Airport | Quito | Ecuador |
| SEPD | PDZ | Pedernales Airport | Pedernales | Ecuador |
| SEPT | PYO | Putumayo Airport | Putumayo | Ecuador |
| SEPV | PVO | Reales Tamarindos Airport | Portoviejo | Ecuador |
| SEPA | PTZ | Rio Amazonas Airport | Pastaza | Ecuador |
| SEST | SCY | San Cristóbal Airport | San Cristóbal Island, Galápagos Islands, Ecuador | Ecuador |
| SECE | WSE | Santa Cecilia Airport | Santa Cecilia | Ecuador |
| SEGS | GPS | Seymour Airport | Galápagos (Baltra) | Ecuador |
| SESC | SUQ | Sucua Airport | Sucua | Ecuador |
| SETH | TSC | Taisha Airport | Taisha | Ecuador |
| SETR | TPC | Tarapoa Airport | Tarapoa | Ecuador |
| SETU | TUA | Teniente Coronel Luis A Mantilla International Airport | Tulcán | Ecuador |
| SETI | TPN | Tiputini Airport | Tiputini | Ecuador |